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The following images indicate the status of the Golden Paths
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NCBI34 |
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Stats
Freeze date:
July 2003
Estimated size:
3 069.43 Mb
Total mapped:
2 843.41 Mb (92.64%)
No. of supercontigs:
350
Super contig N50 length:
29 104 799 bps
In super contigs > 10Mb
2 307.65 Mb (76 s'ctgs)
In super contigs > 1Mb
2 789.20 Mb (199 s'ctgs)
In super contigs > 100Kb
2 842.38 Mb (332 s'ctgs)
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NCBI33 |
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Stats
Freeze date:
14th April 2003
Estimated size:
3 069.31 Mb
Total mapped:
2 832.24 Mb (92.28%)
No. of supercontigs:
405
Super contig N50 length:
26,259,569 bps
In super contigs > 10Mb
2 218.70 Mb (78 s'ctgs)
In super contigs > 1Mb
2 768.70 Mb (229 s'ctgs)
In super contigs > 100Kb
2 831.45 Mb (385 s'ctgs)
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NCBI31 |
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Stats
Freeze date:
November 2002
Estimated size:
3050.53 Mb
Total mapped:
2843.71 Mb (93.22%)
No. of supercontigs:
6921
Super contig N50 length:
4,792,527 bps
In super contigs > 10Mb
943.26 Mb (44 s'ctgs)
In super contigs > 1Mb
2445.45 Mb (575 s'ctgs)
In super contigs > 100Kb
2782.89 Mb (1431 s'ctgs)
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NCBI30 |
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Stats
Freeze date:
24th June 2002
Estimated size:
3041.74 Mb
Total mapped:
2810.22 Mb (92.39%)
No. of supercontigs:
18567
Super contig N50 length:
1,677.49 Kb
In super contigs > 10Mb
627.56 Mb (29 s'ctgs)
In super contigs > 1Mb
1868.00 Mb (550 s'ctgs)
In super contigs > 100Kb
2838.36 Mb (2643 s'ctgs)
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NCBI29 |
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Stats
Freeze date:
5th April 2002
Estimated size:
3124.17 Mb
Total mapped:
2824.85 Mb (90.42%)
No. of supercontigs:
26162
Super contig N50 length:
950.68 Kb
In super contigs > 10Mb
404.78 Mb (19 s'ctgs)
In super contigs > 1Mb
1603.35 Mb (544 s'ctgs)
In super contigs > 100Kb
2562.18 Mb (3354 s'ctgs)
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NCBI28 |
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Stats
Freeze date:
24th December 2001
Estimated size:
3145.30 Mb
Total mapped:
2795.30 Mb (88.87%)
No. of supercontigs:
40083
Super contig N50 length:
459.10 Kb
In super contigs > 10Mb
217.60 Mb (13 s'ctgs)
In super contigs > 1Mb
1097.62 Mb (416 s'ctgs)
In super contigs > 100Kb
2335.09 Mb (4587 s'ctgs)
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NCBI26 |
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Stats
Freeze date:
24th September 2001
Estimated size:
3137.18 Mb
Total mapped:
2796.94 Mb (89.15%)
No. of supercontigs:
62152
Super contig N50 length:
298.66 Kb
In super contigs > 10Mb
136.14 Mb (7 s'ctgs)
In super contigs > 1Mb
830.32 Mb (356 s'ctgs)
In super contigs > 100Kb
2140.21 Mb (5051 s'ctgs)
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UCSC hg8 |
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Stats
Freeze date:
6th August 2001
Estimated size:
3379.08 Mb
Total mapped:
2849.61 Mb (84.33%)
No. of supercontigs:
94203
Super contig N50 length:
207.96 Kb
In super contigs > 10Mb
126.42 Mb (6 s'ctgs)
In super contigs > 1Mb
733.63 Mb (316 s'ctgs)
In super contigs > 100Kb
2052.36 Mb (5124 s'ctgs)
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UCSC (ensembl 1.1.0) |
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Stats
Freeze date:
1st April 2001
Estimated size:
3233.14 Mb
Total mapped:
2744.83 Mb (84.90%)
No. of supercontigs:
110766
Super contig N50 length:
117.75 Kb
In super contigs > 10Mb
110.75 Mb (5 s'ctgs)
In super contigs > 1Mb
413.38 Mb (180 s'ctgs)
In super contigs > 100Kb
1686.02 Mb (5250 s'ctgs)
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UCSC (ensembl 1.0.0) |
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Stats
Freeze date:
12th December 2000
Estimated size:
3286.00 Mb
Total mapped:
2626.67 Mb (79.94%)
No. of supercontigs:
148009
Super contig N50 length:
39.65 Kb
In super contigs > 10Mb
51.56 Mb (2 s'ctgs)
In super contigs > 1Mb
216.74 Mb (95 s'ctgs)
In super contigs > 100Kb
1207.50 Mb (4629 s'ctgs)
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Key |
| | N50 length > 5mb |
| | N50 length > 1mb |
| | N50 length > 500kb |
| | N50 length > 100kb |
| | N50 length > 10kb |
| | More than 50% of bin in golden path |
| | Less than 50% of bin in golden path |
| -Clear- | None of bin in golden path |
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How are these images generated? |
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The procedure for generating these images is as follows:
- The contigs in the golden path are joined up to produce "Supercontigs" where
the contigs overlap.
- The chromosomes are split up into bins of a given length and the N50 length of
that bin is calculated, and used to choose the colour.
- The N50 length is the largest value of n for which 50% of the basepairs
in the bin is in supercontigs with length n basepairs or longer.
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Homo_sapiens 
